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    Lycopene beta/epsilon cyclase protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817824, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Lycopene beta/epsilon cyclase protein
    Primary source
    TAIR:AT2G32640
    Locus tag
    AT2G32640
    See related
    Araport:AT2G32640
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T26B15.22
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    17
    Sequence:
    Chromosome: 2; NC_003071.7 (13846919..13850998, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene cellulose synthase-like B Neighboring gene Pentatricopeptide repeat (PPR-like) superfamily protein Neighboring gene RmlC-like cupins superfamily protein Neighboring gene ncRNA Neighboring gene B3 domain protein, putative (DUF313)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis szl1 mutant reveals a critical role of β-carotene in photosystem I photoprotection. Cazzaniga S, et al. Plant Physiol, 2012 Aug. PMID 23029671, Free PMC Article
    2. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    3. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_128823.5
    NM_201854.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 

    General protein information

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    Preferred Names
    Lycopene beta/epsilon cyclase protein
    NP_180823.3
    • Lycopene beta/epsilon cyclase protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; INVOLVED IN: carotenoid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lycopene beta/epsilon cyclase (InterPro:IPR008671); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_973583.1
    • Lycopene beta/epsilon cyclase protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; INVOLVED IN: carotenoid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lycopene beta/epsilon cyclase (InterPro:IPR008671); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      13846919..13850998 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128823.5 → NP_180823.3  Lycopene beta/epsilon cyclase protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180823.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VRP4, Q0WVA1
      Conserved Domains (2) summary
      TIGR02032
      Location:112 → 408
      GG-red-SF; geranylgeranyl reductase family
      cl21454
      Location:111 → 259
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

    2. NM_201854.2 → NP_973583.1  Lycopene beta/epsilon cyclase protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973583.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VRT1, F4ITT3
      Conserved Domains (2) summary
      pfam01266
      Location:113 → 274
      DAO; FAD dependent oxidoreductase
      cl21454
      Location:111 → 259
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
    Nucleotide Protein
    Heading Accession and Version

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