cct6a chaperonin containing TCP1, subunit 6A (zeta 1) [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: cct6aprovided by ZNC
Official Full Name: chaperonin containing TCP1, subunit 6A (zeta 1)provided by ZNC
Primary source: ZFIN:ZDB-GENE-011018-2
See related: Ensembl:ENSDARG00000021252 AllianceGenome:ZFIN:ZDB-GENE-011018-2
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fa95c01; wu:fa95c01
Summary: Predicted to enable unfolded protein binding activity. Predicted to be involved in protein folding. Predicted to be part of chaperonin-containing T-complex. Orthologous to several human genes including CCT6A (chaperonin containing TCP1 subunit 6A). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 21

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	21	NC_007132.7 (41820359..41838265, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	21	NC_007132.6 (41807149..41826468, complement)

Chromosome 21 - NC_007132.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fa95c01.x1 (e-PCR)
- UniSTS:202596

fb49d09.x1 (e-PCR)
- UniSTS:190615

fi13h05.x1 (e-PCR)
- UniSTS:196831

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info
enables ATP hydrolysis activity	IEA Inferred from Electronic Annotation more info
enables ATP-dependent protein folding chaperone	IEA Inferred from Electronic Annotation more info
enables nucleotide binding	IEA Inferred from Electronic Annotation more info
enables unfolded protein binding	IBA Inferred from Biological aspect of Ancestor more info
enables unfolded protein binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in protein folding	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within protein folding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of chaperonin-containing T-complex	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: T-complex protein 1 subunit zeta

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_201290.1 → NP_958447.1 T-complex protein 1 subunit zeta

See identical proteins and their annotated locations for NP_958447.1

Status: PROVISIONAL

Source sequence(s)

BC044393

UniProtKB/TrEMBL

A0A0R4IQH8, A0A8N7XJE9, A9JT30, Q7ZYX4

Related

ENSDARP00000016831.7, ENSDART00000009484.10

Conserved Domains (2) summary

cd03342
Location:7 → 526

TCP1_zeta; TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL) ...

TIGR02347
Location:3 → 530

chap_CCT_zeta; T-complex protein 1, zeta subunit