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    LOC25485462 uncharacterized LOC25485462 [ Medicago truncatula (barrel medic) ]

    Gene ID: 25485462, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC25485462
    Gene description
    uncharacterized LOC25485462
    Locus tag
    MtrunA17_Chr1g0209081
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC25485462 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 1 NC_053042.1 (53144059..53146882, complement)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 1 NC_016407.2 (49453941..49456655, complement)

    Chromosome 1 - NC_053042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC25485459 Neighboring gene putative zinc finger protein At1g68190 Neighboring gene amino-acid permease BAT1 homolog Neighboring gene amino-acid permease BAT1 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC25485462
    Names
    putative Rad60/SUMO-like domain-containing protein
    ubiquitin-like Rad60 SUMO-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053042.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      53144059..53146882 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013614676.3 → XP_013470130.1  uncharacterized protein LOC25485462

      UniProtKB/TrEMBL
      G8A288, I3T864
      Conserved Domains (1) summary
      cl00155
      Location:133 → 213
      UBQ; Ubiquitin-like proteins
    Nucleotide Protein
    Heading Accession and Version

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