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    COCSUDRAFT_21809 ring-box protein [ Coccomyxa subellipsoidea C-169 ]

    Gene ID: 17044658, updated on 28-Dec-2023

    Summary

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    Gene symbol
    COCSUDRAFT_21809
    Gene description
    ring-box protein
    Locus tag
    COCSUDRAFT_21809
    Gene type
    protein coding
    RNA name
    ring-box protein
    RefSeq status
    PROVISIONAL
    Organism
    Coccomyxa subellipsoidea C-169 (strain: C-169)
    Lineage
    Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Coccomyxaceae; Coccomyxa
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    Genomic context

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    Exon count:
    3

    NW_005178041.1Genomic Context describing neighboring genes Neighboring gene kinase-like protein Neighboring gene P-loop containing nucleoside triphosphate hydrolase protein Neighboring gene hypothetical protein Neighboring gene ankyrin

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_005178041.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Blanc G, et al. Genome Biol, 2012 May 25. PMID 22630137, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cullin family protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cullin-RING ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    ring-box protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_005178041.1 Reference assembly

      Range
      2050546..2051781 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005651135.1 → XP_005651192.1  ring-box protein [Coccomyxa subellipsoidea C-169]

      See identical proteins and their annotated locations for XP_005651192.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      I0Z7M9
      Conserved Domains (2) summary
      pfam12678
      Location:30 → 108
      zf-rbx1; RING-H2 zinc finger
      cl17238
      Location:29 → 119
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    Nucleotide Protein
    Heading Accession and Version

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