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    VPS41 VPS41 subunit of HOPS complex [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 712457, updated on 17-Aug-2024

    Summary

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    Official Symbol
    VPS41provided by VGNC
    Official Full Name
    VPS41 subunit of HOPS complexprovided by VGNC
    Primary source
    VGNC:VGNC:78776
    Locus tag
    EGK_13759
    See related
    Ensembl:ENSMMUG00000010042
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    S53
    Orthologs
    human mouse all
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    Genomic context

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    See VPS41 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (76222442..76433338)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (69834790..70022601)

    Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114676932 Neighboring gene POU class 6 homeobox 2 Neighboring gene small nucleolar RNA SNORA20 Neighboring gene uncharacterized LOC106997450 Neighboring gene protein FAM183BP Neighboring gene keratin, type II cytoskeletal 8 pseudogene Neighboring gene amphiphysin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to starvation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endosomal vesicle fusion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in macroautophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein targeting to vacuole IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of HOPS complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in late endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vacuolar protein sorting-associated protein 41 homolog
    Names
    VPS41, HOPS complex subunit
    vacuolar protein sorting 41 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041756.1 Reference Mmul_10 Primary Assembly

      Range
      76222442..76433338
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028845857.1 → XP_028701690.1  vacuolar protein sorting-associated protein 41 homolog isoform X2

      UniProtKB/TrEMBL
      A0A1D5QV09, A0A1D5R4L3, F6TFN8
      Related
      ENSMMUP00000055249.2, ENSMMUT00000068026.2
      Conserved Domains (3) summary
      smart00299
      Location:521 → 658
      CLH; Clathrin heavy chain repeat homology
      sd00039
      Location:38 → 82
      7WD40; WD40 repeat [structural motif]
      cd16690
      Location:737 → 791
      RING-H2_Vps41; RING finger, H2 subclass, found in vacuolar protein sorting-associated protein 41 (Vps41) and similar proteins

    2. XM_015133685.2 → XP_014989171.1  vacuolar protein sorting-associated protein 41 homolog isoform X1

      UniProtKB/TrEMBL
      A0A663DAF7, A0A8J8XQV6, F6TFM7, F6TFN8, G7MLG3
      Related
      ENSMMUP00000013131.3, ENSMMUT00000014022.4
      Conserved Domains (3) summary
      smart00299
      Location:571 → 708
      CLH; Clathrin heavy chain repeat homology
      sd00039
      Location:88 → 132
      7WD40; WD40 repeat [structural motif]
      cd16690
      Location:787 → 841
      RING-H2_Vps41; RING finger, H2 subclass, found in vacuolar protein sorting-associated protein 41 (Vps41) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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