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    LOC100782841 heat stress transcription factor B-4-like [ Glycine max (soybean) ]

    Gene ID: 100782841, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100782841
    Gene description
    heat stress transcription factor B-4-like
    Locus tag
    GLYMA_14G083700v4
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
    Also known as
    HSF
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    Genomic context

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    See LOC100782841 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 14 NC_038250.2 (7203644..7205421, complement)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 14 NC_038250.1 (7316521..7318298, complement)

    Chromosome 14 - NC_038250.2Genomic Context describing neighboring genes Neighboring gene triacylglycerol lipase OBL1 Neighboring gene uncharacterized LOC112999391 Neighboring gene uncharacterized LOC112999385 Neighboring gene uncharacterized LOC121173484

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isolation and characterization of six heat shock transcription factor cDNA clones from soybean. Czarnecka-Verner E, et al. Plant Mol Biol, 1995 Oct. PMID 7579166
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heat stress transcription factor B-4-like
    Names
    heat shock transcription factor 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001254675.2 → NP_001241604.1  heat stress transcription factor B-4-like

      See identical proteins and their annotated locations for NP_001241604.1

      Status: PROVISIONAL

      Source sequence(s)
      BT093331
      UniProtKB/TrEMBL
      C6T7A7, Q43458
      Conserved Domains (1) summary
      smart00415
      Location:22 → 114
      HSF; heat shock factor

    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038250.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      7203644..7205421 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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