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    LOC100854372 nuclear transcription factor Y subunit B-3 [ Vitis vinifera (wine grape) ]

    Gene ID: 100854372, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100854372
    Gene description
    nuclear transcription factor Y subunit B-3
    Locus tag
    VIT_00004375001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
    Also known as
    GO:0003677 GO:0005634 GO:0005622 GO:0006355 GO:0006350
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    Genomic context

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    See LOC100854372 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 10 NC_081814.1 (2745104..2746640)
    102 previous assembly 12X (GCF_000003745.3) Unplaced Scaffold NW_003724824.1 (5804..7361)

    Chromosome 10 - NC_081814.1Genomic Context describing neighboring genes Neighboring gene SNF1-related protein kinase regulatory subunit beta-2 Neighboring gene uncharacterized LOC100258657 Neighboring gene uncharacterized LOC100263809 Neighboring gene nudix hydrolase 2 Neighboring gene uncharacterized LOC109122219 Neighboring gene trihelix transcription factor GT-2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CCAAT-binding factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear transcription factor Y subunit B-3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081814.1 Reference ASM3070453v1 Primary Assembly

      Range
      2745104..2746640
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003635491.4 → XP_003635539.1  nuclear transcription factor Y subunit B-3

      See identical proteins and their annotated locations for XP_003635539.1

      UniProtKB/TrEMBL
      A0A438DDT9, A5C0V6, F6GZ03
      Conserved Domains (1) summary
      pfam00808
      Location:31 → 96
      CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone
    Nucleotide Protein
    Heading Accession and Version

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