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    LOC100245270 DNAJ protein JJJ1 homolog [ Vitis vinifera (wine grape) ]

    Gene ID: 100245270, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100245270
    Gene description
    DNAJ protein JJJ1 homolog
    Locus tag
    VIT_00033228001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100245270 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 8 NC_081812.1 (23587923..23598225, complement)
    102 previous assembly 12X (GCF_000003745.3) 8 NC_012014.3 (22373998..22384009, complement)

    Chromosome 8 - NC_081812.1Genomic Context describing neighboring genes Neighboring gene S-formylglutathione hydrolase Neighboring gene chromatin-remodeling ATPase INO80 Neighboring gene EF-hand calcium-binding protein Neighboring gene alpha carbonic anhydrase 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
    2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNAJ protein JJJ1 homolog
    Names
    dnaJ homolog subfamily C member 21

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081812.1 Reference ASM3070453v1 Primary Assembly

      Range
      23587923..23598225 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002278766.5 → XP_002278802.2  DNAJ protein JJJ1 homolog

      UniProtKB/TrEMBL
      F6HKR8
      Conserved Domains (3) summary
      sd00020
      Location:297 → 319
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00226
      Location:7 → 73
      DnaJ; DnaJ domain
      pfam12171
      Location:294 → 320
      zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding
    Nucleotide Protein
    Heading Accession and Version

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