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    LOC100262296 uncharacterized LOC100262296 [ Vitis vinifera (wine grape) ]

    Gene ID: 100262296, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100262296
    Gene description
    uncharacterized LOC100262296
    Locus tag
    VIT_00028201001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100262296 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 7 NC_081811.1 (4957821..4964101)
    102 previous assembly 12X (GCF_000003745.3) 7 NC_012013.3 (4578610..4584728)

    Chromosome 7 - NC_081811.1Genomic Context describing neighboring genes Neighboring gene short-chain dehydrogenase reductase 3b-like Neighboring gene uncharacterized LOC104879844 Neighboring gene autophagy-related protein 8i Neighboring gene uncharacterized LOC100257191 Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene chlorophyll a-b binding protein of LHCII type 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ribosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in rescue of stalled ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC100262296
    Names
    zinc finger protein 598

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081811.1 Reference ASM3070453v1 Primary Assembly

      Range
      4957821..4964101
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003632334.4 → XP_003632382.1  uncharacterized protein LOC100262296

      See identical proteins and their annotated locations for XP_003632382.1

      UniProtKB/TrEMBL
      F6HZD9
      Conserved Domains (2) summary
      COG5236
      Location:5 → 303
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      pfam13920
      Location:2 → 48
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

    2. XM_010653997.3 → XP_010652299.1  uncharacterized protein LOC100262296

      See identical proteins and their annotated locations for XP_010652299.1

      UniProtKB/TrEMBL
      F6HZD9
      Conserved Domains (2) summary
      COG5236
      Location:5 → 303
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      pfam13920
      Location:2 → 48
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

    3. XM_010653998.3 → XP_010652300.1  uncharacterized protein LOC100262296

      See identical proteins and their annotated locations for XP_010652300.1

      UniProtKB/TrEMBL
      F6HZD9
      Conserved Domains (2) summary
      COG5236
      Location:5 → 303
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      pfam13920
      Location:2 → 48
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
    Nucleotide Protein
    Heading Accession and Version

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