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    LOC11431634 transcription factor BIM2 [ Medicago truncatula (barrel medic) ]

    Gene ID: 11431634, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC11431634
    Gene description
    transcription factor BIM2
    Locus tag
    MtrunA17_Chr5g0420701
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC11431634 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 5 NC_053046.1 (21132306..21140175, complement)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 5 NC_016411.2 (21187077..21194940, complement)

    Chromosome 5 - NC_053046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112421737 Neighboring gene uncharacterized LOC11435364 Neighboring gene probable tetraacyldisaccharide 4'-kinase, mitochondrial Neighboring gene clustered mitochondria protein-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression dynamics of the Medicago truncatula transcriptome during the symbiotic interaction with Sinorhizobium meliloti: which role for nitric oxide? Boscari A, et al. Plant Physiol, 2013 Jan. PMID 23136381, Free PMC Article
    2. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor BIM2
    Names
    putative transcription factor bHLH family
    transcription factor BIM2-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053046.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      21132306..21140175 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003614291.4 → XP_003614339.1  transcription factor BIM2

      See identical proteins and their annotated locations for XP_003614339.1

      UniProtKB/TrEMBL
      B7FLP7, G7JZB3
      Conserved Domains (1) summary
      pfam00010
      Location:46 → 95
      HLH; Helix-loop-helix DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

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