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    LOC11406522 putative glucose-6-phosphate 1-epimerase [ Medicago truncatula (barrel medic) ]

    Gene ID: 11406522, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC11406522
    Gene description
    putative glucose-6-phosphate 1-epimerase
    Locus tag
    MtrunA17_Chr5g0404381
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC11406522 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 5 NC_053046.1 (7927282..7930612)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 5 NC_016411.2 (7907130..7910459)

    Chromosome 5 - NC_053046.1Genomic Context describing neighboring genes Neighboring gene laccase-11 Neighboring gene ultraviolet-B receptor UVR8 Neighboring gene pentatricopeptide repeat-containing protein At5g66520 Neighboring gene syntaxin-112

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times. Zeng L, et al. Nat Commun, 2014 Sep 24. PMID 25249442, Free PMC Article
    2. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative glucose-6-phosphate 1-epimerase
    Names
    aldose 1-epimerase family protein
    galactose mutarotase-like superfamily protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053046.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      7927282..7930612
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003611991.4 → XP_003612039.1  putative glucose-6-phosphate 1-epimerase

      See identical proteins and their annotated locations for XP_003612039.1

      UniProtKB/TrEMBL
      B7FK87, G7KEX7
      Conserved Domains (1) summary
      cd09020
      Location:52 → 310
      D-hex-6-P-epi_like; D-hexose-6-phosphate epimerase-like
    Nucleotide Protein
    Heading Accession and Version

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