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    LOC11435751 protein NRT1/ PTR FAMILY 6.3 [ Medicago truncatula (barrel medic) ]

    Gene ID: 11435751, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC11435751
    Gene description
    protein NRT1/ PTR FAMILY 6.3
    Locus tag
    MtrunA17_Chr5g0399061
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC11435751 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 5 NC_053046.1 (3661613..3664678, complement)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 5 NC_016411.2 (3644403..3647446, complement)

    Chromosome 5 - NC_053046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC11439021 Neighboring gene U2 spliceosomal RNA Neighboring gene uncharacterized LOC11442453 Neighboring gene protein NRT1/ PTR FAMILY 6.3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nitrate transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in response to nitrate IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein NRT1/ PTR FAMILY 6.3
    Names
    peptide/nitrate transporter
    putative nitrate-transporting ATPase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053046.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      3661613..3664678 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003611236.4 → XP_003611284.1  protein NRT1/ PTR FAMILY 6.3

      See identical proteins and their annotated locations for XP_003611284.1

      UniProtKB/TrEMBL
      G7JW09
      Conserved Domains (1) summary
      pfam00854
      Location:101 → 535
      PTR2; POT family
    Nucleotide Protein
    Heading Accession and Version

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