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    LOC11409011 COMPASS-like H3K4 histone methylase component WDR5A [ Medicago truncatula (barrel medic) ]

    Gene ID: 11409011, updated on 25-Jan-2024

    Summary

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    Gene symbol
    LOC11409011
    Gene description
    COMPASS-like H3K4 histone methylase component WDR5A
    Locus tag
    MtrunA17_Chr4g0067151
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC11409011 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 4 NC_053045.1 (57711385..57714359)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 4 NC_016410.2 (49575749..49578719)

    Chromosome 4 - NC_053045.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC11415120 Neighboring gene uncharacterized LOC11422280 Neighboring gene uncharacterized LOC11420235 Neighboring gene U5 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Set1C/COMPASS complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    COMPASS-like H3K4 histone methylase component WDR5A
    Names
    putative transcription factor WD40-like family
    transducin/WD40 repeat protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053045.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      57711385..57714359
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003609608.4 → XP_003609656.1  COMPASS-like H3K4 histone methylase component WDR5A

      See identical proteins and their annotated locations for XP_003609656.1

      UniProtKB/TrEMBL
      G7JKD3
      Conserved Domains (2) summary
      cd00200
      Location:19 → 321
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:30 → 76
      7WD40; WD40 repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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