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    LOC100790866 auxin-induced protein 10A5-like [ Glycine max (soybean) ]

    Gene ID: 100790866, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100790866
    Gene description
    auxin-induced protein 10A5-like
    Locus tag
    GLYMA_09G222300v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100790866 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 9 NC_038245.2 (45183761..45184453, complement)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 9 NC_038245.1 (44315734..44316446, complement)

    Chromosome 9 - NC_038245.2Genomic Context describing neighboring genes Neighboring gene transcription initiation factor TFIID subunit 14b-like Neighboring gene auxin-responsive protein SAUR50 Neighboring gene 2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in response to auxin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    auxin-induced protein 10A5-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038245.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      45183761..45184453 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003534309.5 → XP_003534357.1  auxin-induced protein 10A5-like

      See identical proteins and their annotated locations for XP_003534357.1

      UniProtKB/TrEMBL
      A0A0R0IIF7
      Conserved Domains (1) summary
      pfam02519
      Location:28 → 96
      Auxin_inducible; Auxin responsive protein
    Nucleotide Protein
    Heading Accession and Version

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