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    LOC100815076 ADP-ribosylation factor GTPase-activating protein AGD5 [ Glycine max (soybean) ]

    Gene ID: 100815076, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100815076
    Gene description
    ADP-ribosylation factor GTPase-activating protein AGD5
    Locus tag
    GLYMA_06G254000v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100815076 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 6 NC_038242.2 (42631238..42637694)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 6 NC_038242.1 (43241861..43248409)

    Chromosome 6 - NC_038242.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100814017 Neighboring gene protein MAIN-LIKE 2-like Neighboring gene cytochrome c-type biogenesis ccda-like chloroplastic protein Neighboring gene proteasome subunit alpha type-6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ADP-ribosylation factor GTPase-activating protein AGD5
    Names
    probable ADP-ribosylation factor GTPase-activating protein AGD5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038242.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      42631238..42637694
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003527231.5 → XP_003527279.1  ADP-ribosylation factor GTPase-activating protein AGD5

      UniProtKB/TrEMBL
      I1KE48, I1LT01
      Conserved Domains (2) summary
      COG5347
      Location:16 → 300
      COG5347; GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]
      cd08204
      Location:19 → 117
      ArfGap; GTPase-activating protein (GAP) for the ADP ribosylation factors (ARFs)
    Nucleotide Protein
    Heading Accession and Version

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