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    LOC100527710 uncharacterized LOC100527710 [ Glycine max (soybean) ]

    Gene ID: 100527710, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100527710
    Gene description
    uncharacterized LOC100527710
    Locus tag
    GLYMA_17G254300v4
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100527710 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 17 NC_038253.2 (40929091..40932050)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 17 NC_038253.1 (40826531..40829465)

    Chromosome 17 - NC_038253.2Genomic Context describing neighboring genes Neighboring gene BEL1-like homeodomain protein 7 Neighboring gene beta-galactosidase 5 Neighboring gene thioredoxin-like superfamily protein Neighboring gene tRNA 2'-phosphotransferase 1 Neighboring gene probable GTP-binding protein OBGC2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell surface receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC100527710

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001249368.2 → NP_001236297.1  uncharacterized protein LOC100527710

      See identical proteins and their annotated locations for NP_001236297.1

      Status: PREDICTED

      Source sequence(s)
      BT092576
      UniProtKB/TrEMBL
      C6T564, K7MNY2
      Conserved Domains (3) summary
      smart00668
      Location:57 → 107
      CTLH; C-terminal to LisH motif
      smart00757
      Location:110 → 202
      CRA; CT11-RanBPM
      pfam10607
      Location:54 → 194
      CLTH; CTLH/CRA C-terminal to LisH motif domain

    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038253.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      40929091..40932050
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014769299.3 → XP_014624785.1  uncharacterized protein LOC100527710 isoform X1

      Conserved Domains (3) summary
      smart00668
      Location:67 → 121
      CTLH; C-terminal to LisH motif
      smart00757
      Location:124 → 202
      CRA; CT11-RanBPM
      pfam10607
      Location:67 → 210
      CLTH; CTLH/CRA C-terminal to LisH motif domain

    2. XM_014769300.3 → XP_014624786.1  uncharacterized protein LOC100527710 isoform X2

      UniProtKB/TrEMBL
      K7MNY1
      Conserved Domains (1) summary
      pfam10607
      Location:54 → 188
      CLTH; CTLH/CRA C-terminal to LisH motif domain

    3. XM_006600092.4 → XP_006600155.1  uncharacterized protein LOC100527710 isoform X3

      UniProtKB/TrEMBL
      K7MNY2
      Conserved Domains (3) summary
      smart00668
      Location:67 → 121
      CTLH; C-terminal to LisH motif
      smart00757
      Location:124 → 216
      CRA; CT11-RanBPM
      pfam10607
      Location:67 → 208
      CLTH; CTLH/CRA C-terminal to LisH motif domain

    4. XM_014769301.3 → XP_014624787.1  uncharacterized protein LOC100527710 isoform X4

      UniProtKB/TrEMBL
      K7MNY3
      Conserved Domains (3) summary
      smart00668
      Location:24 → 78
      CTLH; C-terminal to LisH motif
      smart00757
      Location:81 → 159
      CRA; CT11-RanBPM
      pfam10607
      Location:24 → 167
      CLTH; CTLH/CRA C-terminal to LisH motif domain
    Nucleotide Protein
    Heading Accession and Version

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