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    DIG3 protein phosphatase 2C [ Solanum lycopersicum (tomato) ]

    Gene ID: 543923, updated on 1-Nov-2024

    Summary

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    Gene symbol
    DIG3
    Gene description
    protein phosphatase 2C
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    See DIG3 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 7 NC_090806.1 (68030192..68033181)
    103 previous assembly SL3.0 (GCF_000188115.4) 7 NC_015444.3 (65727132..65730121)

    Chromosome 7 - NC_090806.1Genomic Context describing neighboring genes Neighboring gene protein RICE SALT SENSITIVE 3 Neighboring gene uncharacterized LOC104648566 Neighboring gene squamosa promoter-binding-like protein 3 Neighboring gene uncharacterized LOC104648565 Neighboring gene phytosulfokine receptor 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression of plant protein phosphatase 2C interferes with nuclear import of the Agrobacterium T-complex protein VirD2. Tao Y, et al. Proc Natl Acad Sci U S A, 2004 Apr 6. PMID 15047887, Free PMC Article
    2. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein serine/threonine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in peptidyl-threonine dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein phosphatase 2C
    NP_001234500.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001247571.2 → NP_001234500.1  protein phosphatase 2C

      See identical proteins and their annotated locations for NP_001234500.1

      Status: VALIDATED

      Source sequence(s)
      AK246246, AK323558
      UniProtKB/TrEMBL
      Q6QLU0
      Conserved Domains (1) summary
      cd00143
      Location:42 → 281
      PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...

    RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SLM_r2.1 Primary Assembly

    Genomic

    1. NC_090806.1 Reference SLM_r2.1 Primary Assembly

      Range
      68030192..68033181
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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