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    TRIREDRAFT_21166 hypothetical protein [ Trichoderma reesei QM6a ]

    Gene ID: 18483935, updated on 17-May-2024

    Summary

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    Gene symbol
    TRIREDRAFT_21166
    Gene description
    hypothetical protein
    Locus tag
    TRIREDRAFT_21166
    See related
    FungiDB:TRIREDRAFT_21166; VEuPathDB:TRIREDRAFT_21166
    Gene type
    protein coding
    RNA name
    uncharacterized protein
    RefSeq status
    PROVISIONAL
    Organism
    Trichoderma reesei QM6a (strain: QM6a, type-material: type material of Trichoderma reesei)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Hypocreales; Hypocreaceae; Trichoderma
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    Genomic context

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    See TRIREDRAFT_21166 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    1

    NW_006711148.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006711148.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina). Martinez D, et al. Nat Biotechnol, 2008 May. PMID 18454138
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables U4 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables U6 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U4/U6 x U5 tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hypothetical protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_006711148.1 Reference assembly

      Range
      676444..678152
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006960909.1 → XP_006960971.1  uncharacterized protein TRIREDRAFT_21166 [Trichoderma reesei QM6a]

      See identical proteins and their annotated locations for XP_006960971.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A024SJP7, G0R736
      Conserved Domains (4) summary
      COG2319
      Location:170 → 515
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:201 → 511
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam08799
      Location:69 → 97
      PRP4; pre-mRNA processing factor 4 (PRP4) like
      sd00039
      Location:240 → 287
      7WD40; WD40 repeat [structural motif]
    Protein Accession Links
    GenPept Link UniProtKB Link
    EGR52211.1

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