U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC107892108 chitinase-like protein 2 [ Gossypium hirsutum (cotton) ]

    Gene ID: 107892108, updated on 12-Aug-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC107892108
    Gene description
    chitinase-like protein 2
    Locus tag
    ERO13_D09G064100v2
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gossypium hirsutum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
    Also known as
    CTL1
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC107892108 in Genome Data Viewer
    Location:
    chromosome: D09
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current Gossypium_hirsutum_v2.1 (GCF_007990345.1) D09 NC_053445.1 (32139914..32141584, complement)

    Chromosome D09 - NC_053445.1Genomic Context describing neighboring genes Neighboring gene acetate/butyrate--CoA ligase AAE7, peroxisomal Neighboring gene uncharacterized LOC107892110 Neighboring gene transfer RNA valine (anticodon AAC) Neighboring gene calmodulin-binding transcription activator 5 Neighboring gene dihydrolipoyl dehydrogenase 2, chloroplastic

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_053445.1 Chromosome D09 Reference Gossypium_hirsutum_v2.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Members of a new group of chitinase-like genes are expressed preferentially in cotton cells with secondary walls. Zhang D, et al. Plant Mol Biol, 2004 Feb. PMID 15284492

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell wall macromolecule catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chitin catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    chitinase-like protein 2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001326795.1 → NP_001313724.1  chitinase-like protein 2 precursor

      Status: PROVISIONAL

      Source sequence(s)
      AY291285
      UniProtKB/TrEMBL
      A0A1U8I2Y7, Q6JX04
      Conserved Domains (2) summary
      cd00325
      Location:62 → 299
      chitinase_glyco_hydro_19; Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some ...
      pfam00182
      Location:63 → 287
      Glyco_hydro_19; Chitinase class I

    RefSeqs of Annotated Genomes: GCF_007990345.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Gossypium_hirsutum_v2.1 Primary Assembly

    Genomic

    1. NC_053445.1 Reference Gossypium_hirsutum_v2.1 Primary Assembly

      Range
      32139914..32141584 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases