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    GALE UDP-galactose-4-epimerase [ Sus scrofa (pig) ]

    Gene ID: 100621392, updated on 17-Aug-2024

    Summary

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    Official Symbol
    GALEprovided by VGNC
    Official Full Name
    UDP-galactose-4-epimeraseprovided by VGNC
    Primary source
    VGNC:VGNC:88325
    See related
    Ensembl:ENSSSCG00000027827
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in liver (RPKM 16.4), kidney (RPKM 10.7) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See GALE in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (81605968..81610535, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (75416319..75420891)

    Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene PITH domain containing 1 Neighboring gene lysophospholipase 2 Neighboring gene 3-hydroxy-3-methylglutaryl-CoA lyase Neighboring gene alpha-L-fucosidase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Comparative analysis of protein coding sequences from human, mouse and the domesticated pig. Jørgensen FG, et al. BMC Biol, 2005 Jan 28. PMID 15679890, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables UDP-glucose 4-epimerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in galactose catabolic process via UDP-galactose IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    UDP-glucose 4-epimerase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

      Range
      81605968..81610535 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003356202.4 → XP_003356250.1  UDP-glucose 4-epimerase

      See identical proteins and their annotated locations for XP_003356250.1

      UniProtKB/TrEMBL
      A0A480P9F6, A0A4X1VTU2, A0A8D0J228, A0A8D0R6F2, I3LL84
      Related
      ENSSSCP00000024851.3, ENSSSCT00000028713.4
      Conserved Domains (1) summary
      cd05247
      Location:4 → 338
      UDP_G4E_1_SDR_e; UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs

    2. XM_021095529.1 → XP_020951188.1  UDP-glucose 4-epimerase

      UniProtKB/TrEMBL
      A0A480P9F6, A0A4X1VTU2, A0A8D0J228, A0A8D0R6F2, I3LL84
      Conserved Domains (1) summary
      cd05247
      Location:4 → 338
      UDP_G4E_1_SDR_e; UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs
    Nucleotide Protein
    Heading Accession and Version

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