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Links from Protein

    • Showing Current items.

    [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841543, updated on 22-Aug-2024

    Summary

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    Primary source
    Araport:AT1G51200
    Locus tag
    AT1G51200
    See related
    TAIR:AT1G51200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F11M15.7; F11M15_7
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (18984281..18986653)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene UDP-Glycosyltransferase superfamily protein Neighboring gene WIP domain protein 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001084225.2
    NM_001198264.1
    NM_001198265.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    A20/AN1-like zinc finger family protein
    NP_001077694.1
    • A20/AN1-like zinc finger family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT2G36320.1); Has 1055 Blast hits to 1034 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 447; Fungi - 9; Plants - 481; Viruses - 6; Other Eukaryotes - 112 (source: NCBI BLink).
    NP_001185193.1
    • A20/AN1-like zinc finger family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT2G36320.1).
    NP_001185194.1
    • A20/AN1-like zinc finger family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT2G36320.1).
    NP_564585.1
    • A20/AN1-like zinc finger family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT2G36320.1); Has 1055 Blast hits to 1034 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 447; Fungi - 9; Plants - 481; Viruses - 6; Other Eukaryotes - 112 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      18984281..18986653
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103998.3 → NP_564585.1  A20/AN1-like zinc finger family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564585.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8H0X0, Q9SYC3
      UniProtKB/TrEMBL
      A0A178W307, A0A5S9WKT4, A0A654EI08
      Conserved Domains (2) summary
      smart00154
      Location:114 → 150
      ZnF_AN1; AN1-like Zinc finger
      pfam01754
      Location:17 → 38
      zf-A20; A20-like zinc finger

    2. NM_001198264.1 → NP_001185193.1  A20/AN1-like zinc finger family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185193.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8H0X0, Q9SYC3
      UniProtKB/TrEMBL
      A0A178W307, A0A5S9WKT4, A0A654EI08
      Conserved Domains (2) summary
      smart00154
      Location:114 → 150
      ZnF_AN1; AN1-like Zinc finger
      pfam01754
      Location:17 → 38
      zf-A20; A20-like zinc finger

    3. NM_001198265.1 → NP_001185194.1  A20/AN1-like zinc finger family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185194.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8H0X0, Q9SYC3
      UniProtKB/TrEMBL
      A0A178W307, A0A5S9WKT4, A0A654EI08
      Conserved Domains (2) summary
      smart00154
      Location:114 → 150
      ZnF_AN1; AN1-like Zinc finger
      pfam01754
      Location:17 → 38
      zf-A20; A20-like zinc finger

    4. NM_001084225.2 → NP_001077694.1  A20/AN1-like zinc finger family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077694.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8H0X0, Q9SYC3
      UniProtKB/TrEMBL
      A0A178W307, A0A5S9WKT4, A0A654EI08
      Conserved Domains (2) summary
      smart00154
      Location:114 → 150
      ZnF_AN1; AN1-like Zinc finger
      pfam01754
      Location:17 → 38
      zf-A20; A20-like zinc finger
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8H0X0.2

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