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    fadA delta 5 fatty acid desaturase [ Cavenderia fasciculata ]

    Gene ID: 14871937, updated on 28-Dec-2023

    Summary

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    Gene symbol
    fadA
    Gene description
    delta 5 fatty acid desaturase
    Locus tag
    DFA_07000
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Cavenderia fasciculata (isolate: SH3)
    Lineage
    Eukaryota; Amoebozoa; Evosea; Eumycetozoa; Dictyostelia; Acytosteliales; Cavenderiaceae; Cavenderia
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    Genomic context

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    See fadA in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    4

    NW_004457723.1Genomic Context describing neighboring genes Neighboring gene ubiquinone oxidoreductase Neighboring gene uncharacterized protein Neighboring gene G-protein-coupled receptor Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004457723.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    delta 5 fatty acid desaturase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_004457723.1 Reference assembly

      Range
      403371..405314
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004366822.1 → XP_004366879.1  delta 5 fatty acid desaturase [Cavenderia fasciculata]

      See identical proteins and their annotated locations for XP_004366879.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      F4PX93
      Conserved Domains (3) summary
      cd03506
      Location:150 → 418
      Delta6-FADS-like; The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases ...
      pfam00173
      Location:8 → 82
      Cyt-b5; Cytochrome b5-like Heme/Steroid binding domain
      pfam00487
      Location:147 → 423
      FA_desaturase; Fatty acid desaturase
    Nucleotide Protein
    Heading Accession and Version

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