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    LOC111430816 silicon efflux transporter LSI2-like [ Cucurbita moschata (crookneck pumpkin) ]

    Gene ID: 111430816, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC111430816
    Gene description
    silicon efflux transporter LSI2-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita moschata
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
    Also known as
    CmLsi2-2
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    Genomic context

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    See LOC111430816 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current Cmos_1.0 (GCF_002738365.1) Unplaced Scaffold NW_019268550.1 (558688..561805)

    NW_019268550.1Genomic Context describing neighboring genes Neighboring gene sec-independent protein translocase protein TATB, chloroplastic-like Neighboring gene uncharacterized LOC111430767 Neighboring gene mitogen-activated protein kinase kinase kinase YODA-like Neighboring gene uncharacterized LOC111430842 Neighboring gene 60S ribosomal protein L36-2-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019268550 Unplaced Scaffold Reference Cmos_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    silicon efflux transporter LSI2-like
    Names
    silicon efflux transporter CmLsi2-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita moschata Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cmos_1.0

    Genomic

    1. NW_019268550.1 Reference Cmos_1.0

      Range
      558688..561805
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023067230.1 → XP_022922998.1  silicon efflux transporter LSI2-like

      UniProtKB/TrEMBL
      F1SX53
      Conserved Domains (1) summary
      cl21473
      Location:1 → 528
      ArsB_NhaD_permease; Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices ...

    2. XM_023067231.1 → XP_022922999.1  silicon efflux transporter LSI2-like

      UniProtKB/TrEMBL
      F1SX53
      Conserved Domains (1) summary
      cl21473
      Location:1 → 528
      ArsB_NhaD_permease; Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices ...
    Nucleotide Protein
    Heading Accession and Version

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