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    Eint_050510 transcription initiation factor TFIIIB subunit Brf1 [ Encephalitozoon intestinalis ATCC 50506 ]

    Gene ID: 9699158, updated on 17-May-2024

    Summary

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    Gene symbol
    Eint_050510
    Gene description
    transcription initiation factor TFIIIB subunit Brf1
    Locus tag
    Eint_050510
    See related
    MicrosporidiaDB:Eint_050510; VEuPathDB:Eint_050510
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Encephalitozoon intestinalis ATCC 50506 (strain: ATCC 50506)
    Lineage
    Eukaryota; Fungi; Fungi incertae sedis; Microsporidia; Unikaryonidae; Encephalitozoon
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    Genomic context

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    See Eint_050510 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    1
    Sequence:
    Chromosome: V; NC_014419.1 (65703..66890, complement)

    Chromosome V - NC_014419.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene putative synaptobrevin-like protein Neighboring gene uncharacterized protein Neighboring gene TATA-binding protein-associated factor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_014419.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The complete sequence of the smallest known nuclear genome from the microsporidian Encephalitozoon intestinalis. Corradi N, et al. Nat Commun, 2010 Sep 21. PMID 20865802, Free PMC Article
    2. Gain and loss of multiple functionally related, horizontally transferred genes in the reduced genomes of two microsporidian parasites. Pombert JF, et al. Proc Natl Acad Sci U S A, 2012 Jul 31. PMID 22802648, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase III general transcription initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase III type 3 promoter sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables TBP-class protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription by RNA polymerase III IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription preinitiation complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription factor TFIIIB complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription preinitiation complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription initiation factor TFIIIB subunit Brf1
    XP_003072860.1
    • similar to ECU05_0500

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_014419.1 Reference assembly

      Range
      65703..66890 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003072814.1 → XP_003072860.1  transcription initiation factor TFIIIB subunit Brf1 [Encephalitozoon intestinalis ATCC 50506]

      See identical proteins and their annotated locations for XP_003072860.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      E0S772
      Conserved Domains (5) summary
      COG1405
      Location:1 → 261
      SUA7; Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
      cd00043
      Location:164 → 249
      CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...
      pfam07741
      Location:315 → 391
      BRF1; Brf1-like TBP-binding domain
      pfam08271
      Location:3 → 36
      TF_Zn_Ribbon; TFIIB zinc-binding
      cl00050
      Location:77 → 147
      CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...
    Nucleotide Protein
    Heading Accession and Version

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