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    AGOS_AFR452C AFR452Cp [ Eremothecium gossypii ATCC 10895 ]

    Gene ID: 4622276, updated on 16-Nov-2023

    Summary

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    Gene symbol
    AGOS_AFR452C
    Gene description
    AFR452Cp
    Locus tag
    AGOS_AFR452C
    Gene type
    protein coding
    RNA name
    AFR452Cp
    RefSeq status
    PROVISIONAL
    Organism
    Eremothecium gossypii ATCC 10895 (strain: ATCC 10895, culture-collection: ATCC:10895)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium
    Old locus tag
    AFR452C
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    Genomic context

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    See AGOS_AFR452C in Genome Data Viewer
    Location:
    chromosome: VI
    Exon count:
    1
    Sequence:
    Chromosome: VI; NC_005787.5 (1253030..1254709, complement)

    Chromosome VI - NC_005787.5Genomic Context describing neighboring genes Neighboring gene AFR451W-Ap Neighboring gene tRNA-Tyr Neighboring gene AFR453Wp Neighboring gene AFR454Wp

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_005787.5

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome. Dietrich FS, et al. Science, 2004 Apr 9. PMID 15001715

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    AFR452Cp
    NP_985999.3
    • Syntenic homolog of Saccharomyces cerevisiae YDR243C (PRP28)

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_005787.5 Reference assembly

      Range
      1253030..1254709 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_211354.3 → NP_985999.3  AFR452Cp [Eremothecium gossypii ATCC 10895]

      See identical proteins and their annotated locations for NP_985999.3

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      Q752X1
      Conserved Domains (3) summary
      smart00487
      Location:173 → 379
      DEXDc; DEAD-like helicases superfamily
      cd00079
      Location:386 → 511
      HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
      cd00268
      Location:159 → 369
      DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
    Nucleotide Protein
    Heading Accession and Version

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