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    LOC9316257 histone deacetylase complex subunit SAP18 [ Arabidopsis lyrata subsp. lyrata ]

    Gene ID: 9316257, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC9316257
    Gene description
    histone deacetylase complex subunit SAP18
    Locus tag
    ARALYDRAFT_904009
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302552.1 (22206814..22208433, complement)

    NW_003302552.1Genomic Context describing neighboring genes Neighboring gene UTP:RNA uridylyltransferase 1 Neighboring gene glyoxylate/hydroxypyruvate reductase HPR3 Neighboring gene agamous-like MADS-box protein AGL6 Neighboring gene MADS-box protein SOC1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003302552 Unplaced Scaffold Reference v.1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription factor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone deacetylase complex subunit SAP18

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v.1.0 Primary Assembly

    Genomic

    1. NW_003302552.1 Reference v.1.0 Primary Assembly

      Range
      22206814..22208433 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002881977.2 → XP_002882023.1  histone deacetylase complex subunit SAP18

      See identical proteins and their annotated locations for XP_002882023.1

      UniProtKB/TrEMBL
      D7LCL3
      Conserved Domains (1) summary
      pfam06487
      Location:36 → 150
      SAP18; Sin3 associated polypeptide p18 (SAP18)
    Nucleotide Protein
    Heading Accession and Version

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