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    LOC100260812 uncharacterized LOC100260812 [ Vitis vinifera (wine grape) ]

    Gene ID: 100260812, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100260812
    Gene description
    uncharacterized LOC100260812
    Locus tag
    VIT_00013111001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100260812 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 2 NC_081806.1 (9600398..9610181, complement)
    102 previous assembly 12X (GCF_000003745.3) 2 NC_012008.3 (8175709..8185485, complement)

    Chromosome 2 - NC_081806.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At1g63330 Neighboring gene uncharacterized LOC100255740 Neighboring gene ARF guanine-nucleotide exchange factor GNOM Neighboring gene probable inactive shikimate kinase like 2, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ribosomal large subunit biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of preribosome, large subunit precursor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC100260812
    Names
    WD repeat-containing protein 74

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081806.1 Reference ASM3070453v1 Primary Assembly

      Range
      9600398..9610181 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002277252.5 → XP_002277288.1  uncharacterized protein LOC100260812 isoform X1

      See identical proteins and their annotated locations for XP_002277288.1

      UniProtKB/TrEMBL
      A0A438JZX6, D7TTT7
      Conserved Domains (3) summary
      COG2319
      Location:163 → 341
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:115 → 148
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:110 → 337
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. XM_010664964.3 → XP_010663266.1  uncharacterized protein LOC100260812 isoform X2

      Conserved Domains (3) summary
      COG2319
      Location:122 → 300
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:177 → 215
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:69 → 296
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

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