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    LOC9326266 ubiquitin carboxyl-terminal hydrolase 15 [ Arabidopsis lyrata subsp. lyrata ]

    Gene ID: 9326266, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC9326266
    Gene description
    ubiquitin carboxyl-terminal hydrolase 15
    Locus tag
    ARALYDRAFT_889106
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    UBP15
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    Genomic context

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    Location:
    chromosome: Un
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302555.1 (7151960..7157250, complement)

    NW_003302555.1Genomic Context describing neighboring genes Neighboring gene probable prefoldin subunit 5 Neighboring gene heme-binding protein 2 Neighboring gene cationic amino acid transporter 8, vacuolar Neighboring gene coiled-coil domain-containing protein 94 homolog Neighboring gene interactor of constitutive active ROPs 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003302555 Unplaced Scaffold Reference v.1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin carboxyl-terminal hydrolase 15
    Names
    ubiquitin-specific protease 15

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v.1.0 Primary Assembly

    Genomic

    1. NW_003302555.1 Reference v.1.0 Primary Assembly

      Range
      7151960..7157250 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021011437.1 → XP_020867096.1  ubiquitin carboxyl-terminal hydrolase 15 isoform X1

      Conserved Domains (2) summary
      cd02661
      Location:445 → 750
      Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      pfam01753
      Location:130 → 167
      zf-MYND; MYND finger

    2. XM_002892889.2 → XP_002892935.1  ubiquitin carboxyl-terminal hydrolase 15 isoform X2

      See identical proteins and their annotated locations for XP_002892935.1

      UniProtKB/TrEMBL
      D7KEL9
      Conserved Domains (2) summary
      cd02661
      Location:441 → 746
      Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      pfam01753
      Location:130 → 167
      zf-MYND; MYND finger

    3. XM_021011440.1 → XP_020867099.1  ubiquitin carboxyl-terminal hydrolase 15 isoform X2

      UniProtKB/TrEMBL
      D7KEL9
      Conserved Domains (2) summary
      cd02661
      Location:441 → 746
      Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      pfam01753
      Location:130 → 167
      zf-MYND; MYND finger

    4. XM_021011438.1 → XP_020867097.1  ubiquitin carboxyl-terminal hydrolase 15 isoform X1

      Conserved Domains (2) summary
      cd02661
      Location:445 → 750
      Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      pfam01753
      Location:130 → 167
      zf-MYND; MYND finger

    5. XM_021011439.1 → XP_020867098.1  ubiquitin carboxyl-terminal hydrolase 15 isoform X1

      Conserved Domains (2) summary
      cd02661
      Location:445 → 750
      Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      pfam01753
      Location:130 → 167
      zf-MYND; MYND finger
    Nucleotide Protein
    Heading Accession and Version

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