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    SQSTM1 sequestosome 1 [ Macaca fascicularis (crab-eating macaque) ]

    Gene ID: 102144942, updated on 7-Jun-2024

    Summary

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    Gene symbol
    SQSTM1
    Gene description
    sequestosome 1
    See related
    Ensembl:ENSMFAG00000032992
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca fascicularis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SQSTM1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_05 current T2T-MFA8v1.0 (GCF_037993035.1) 6 NC_088380.1 (186690929..186730054)
    102 previous assembly MFA1912RKSv2 (GCF_012559485.2) 6 NC_052260.1 (174876168..174914945)

    Chromosome 6 - NC_088380.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC135971074 Neighboring gene alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B Neighboring gene leukotriene C4 synthase Neighboring gene MRN complex interacting protein Neighboring gene TBC1 domain family member 9B Neighboring gene ring finger protein 130

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables K63-linked polyubiquitin modification-dependent protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase C binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in aggrephagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endosome organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in aggresome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in amphisome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sequestosome-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_037993035.1-RS_2024_05

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference T2T-MFA8v1.0

    Genomic

    1. NC_088380.1 Reference T2T-MFA8v1.0

      Range
      186690929..186730054
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015452371.3 → XP_015307857.3  sequestosome-1 isoform X3

    2. XM_015452372.3 → XP_015307858.3  sequestosome-1 isoform X3

    3. XM_065545960.1 → XP_065402032.1  sequestosome-1 isoform X3

    4. XM_045395068.2 → XP_045251003.2  sequestosome-1 isoform X3

    5. XM_005558787.4 → XP_005558844.3  sequestosome-1 isoform X3

    6. XM_065545961.1 → XP_065402033.1  sequestosome-1 isoform X3

    7. XM_005558785.4 → XP_005558842.3  sequestosome-1 isoform X1

    8. XM_005558786.4 → XP_005558843.3  sequestosome-1 isoform X2

    Nucleotide Protein
    Heading Accession and Version

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