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    LOC102549898 uncharacterized LOC102549898 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 102549898, updated on 17-Aug-2024

    Summary

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    Symbol
    LOC102549898provided by RGD
    Full Name
    uncharacterized LOC102549898provided by RGD
    Primary source
    RGD:7650960
    See related
    AllianceGenome:RGD:7650960
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Heart (RPKM 29.8), Muscle (RPKM 26.0) and 6 other tissues See more
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    Genomic context

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    See LOC102549898 in Genome Data Viewer
    Location:
    4q44
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (180645958..180654844, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (178917874..178924165, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (180311972..180321162, complement)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene Ras association domain family member 8 Neighboring gene basic helix-loop-helix family, member e41 Neighboring gene sarcospan Neighboring gene uncharacterized LOC134486658 Neighboring gene inositol 1,4,5-trisphosphate receptor, type 2 Neighboring gene uncharacterized LOC134486659

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    clumping factor A-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      180645958..180654844 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063286992.1 → XP_063143062.1  clumping factor A-like

    2. XM_063286993.1 → XP_063143063.1  clumping factor A-like

    3. XM_063286994.1 → XP_063143064.1  clumping factor A-like

    RNA

    1. XR_005504061.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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