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    apod apolipoprotein D [ Anolis carolinensis (green anole) ]

    Gene ID: 134298063, updated on 29-Mar-2024

    Summary

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    Gene symbol
    apod
    Gene description
    apolipoprotein D
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anolis carolinensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Dactyloidae; Anolis
    Orthologs
    human mouse all
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    Genomic context

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    See apod in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current rAnoCar3.1.pri (GCF_035594765.1) 3 NC_085843.1 (288247058..288253175)

    Chromosome 3 - NC_085843.1Genomic Context describing neighboring genes Neighboring gene D-beta-hydroxybutyrate dehydrogenase, mitochondrial Neighboring gene D-beta-hydroxybutyrate dehydrogenase, mitochondrial-like Neighboring gene protein phosphatase 1 regulatory inhibitor subunit 2 Neighboring gene ArfGAP with coiled-coil, ankyrin repeat and PH domains 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_085843.1 Chromosome 3 Reference rAnoCar3.1.pri

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cholesterol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in brain development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lipid transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to reactive oxygen species IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tissue regeneration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    apolipoprotein D

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_035594765.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rAnoCar3.1.pri

    Genomic

    1. NC_085843.1 Reference rAnoCar3.1.pri

      Range
      288247058..288253175
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_062977578.1 → XP_062833648.1  apolipoprotein D isoform X1

    2. XM_062977580.1 → XP_062833650.1  apolipoprotein D isoform X2

    3. XM_062977579.1 → XP_062833649.1  apolipoprotein D isoform X2

    Nucleotide Protein
    Heading Accession and Version

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