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    chrne cholinergic receptor, nicotinic, epsilon [ Pungitius pungitius (ninespine stickleback) ]

    Gene ID: 119215113, updated on 21-Mar-2024

    Summary

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    Gene symbol
    chrne
    Gene description
    cholinergic receptor, nicotinic, epsilon
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pungitius pungitius
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Gasterosteales; Gasterosteidae; Pungitius
    Orthologs
    zebrafish all
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    Genomic context

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    See chrne in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_01 current fPunPun2.1 (GCF_949316345.1) 16 NC_084915.1 (8783259..8790192)
    100 previous assembly NSP_V7 (GCF_902500615.1) Unplaced Scaffold NW_023616461.1 (7332022..7338940)

    Chromosome 16 - NC_084915.1Genomic Context describing neighboring genes Neighboring gene ATPase Na+/K+ transporting subunit beta 2b Neighboring gene glycolipid transfer protein domain containing 2b Neighboring gene phospholipase D2 Neighboring gene misshapen-like kinase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acetylcholine-gated monoatomic cation-selective channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transmembrane signaling receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chemical synaptic transmission IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in monoatomic ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nervous system process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of membrane potential IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in neuron projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in postsynaptic membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    acetylcholine receptor subunit epsilon

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_949316345.1-RS_2024_01

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fPunPun2.1

    Genomic

    1. NC_084915.1 Reference fPunPun2.1

      Range
      8783259..8790192
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_037466968.2 → XP_037322865.2  acetylcholine receptor subunit epsilon

    Nucleotide Protein
    Heading Accession and Version

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