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    LOC132725349 TNF receptor-associated factor 2-like [ Ruditapes philippinarum (Manila clam) ]

    Gene ID: 132725349, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC132725349
    Gene description
    TNF receptor-associated factor 2-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ruditapes philippinarum
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Heteroconchia; Euheterodonta; Imparidentia; Neoheterodontei; Venerida; Veneroidea; Veneridae; Ruditapes
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    Genomic context

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    See LOC132725349 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2023_10 current ASM2657151v2 (GCF_026571515.1) Unplaced Scaffold NW_026864367.1 (6744..31000)

    NW_026864367.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase DZIP3-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_026864367 Unplaced Scaffold Reference ASM2657151v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables tumor necrosis factor receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of JNK cascade IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K63-linked ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of canonical NF-kappaB signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tumor necrosis factor-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasmic side of plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of plasma membrane signaling receptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TNF receptor-associated factor 2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_026571515.1-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM2657151v2 Primary Assembly

    Genomic

    1. NW_026864367.1 Reference ASM2657151v2 Primary Assembly

      Range
      6744..31000
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_060710456.1 → XP_060566439.1  TNF receptor-associated factor 2-like

    2. XM_060710457.1 → XP_060566440.1  TNF receptor-associated factor 2-like

    Nucleotide Protein
    Heading Accession and Version

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