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    SCAB_RS09250 rhamnogalacturonan lyase B N-terminal domain-containing protein [ Streptomyces scabiei 87.22 ]

    Gene ID: 24311389, updated on 15-Apr-2023

    Summary

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    Gene symbol
    SCAB_RS09250
    Gene description
    rhamnogalacturonan lyase B N-terminal domain-containing protein
    Locus tag
    SCAB_RS09250
    Gene type
    protein coding
    Organism
    Streptomyces scabiei 87.22 (strain: 87.22)
    Lineage
    Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces
    Old locus tag
    SCAB_19551
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    Genomic context

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    Sequence:
    NC_013929.1 (2213263..2214957)

    NC_013929.1Genomic Context describing neighboring genes Neighboring gene DUF2264 domain-containing protein Neighboring gene rhamnogalacturonan acetylesterase Neighboring gene RICIN domain-containing protein Neighboring gene glycoside hydrolase family 43 protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_013929.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Rhamnogalacturonan lyase reveals a unique three-domain modular structure for polysaccharide lyase family 4. McDonough MA, et al. FEBS Lett, 2004 May 7. PMID 15135077
    2. Structural and biochemical studies elucidate the mechanism of rhamnogalacturonan lyase from Aspergillus aculeatus. Jensen MH, et al. J Mol Biol, 2010 Nov 19. PMID 20851126
    3. Streptomyces scabies 87-22 contains a coronafacic acid-like biosynthetic cluster that contributes to plant-microbe interactions. Bignell DR, et al. Mol Plant Microbe Interact, 2010 Feb. PMID 20064060

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    rhamnogalacturonan lyase B N-terminal domain-containing protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_013929.1 Reference assembly

      Range
      2213263..2214957
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_012999800.1 MULTISPECIES: rhamnogalacturonan lyase B N-terminal domain-containing protein [Streptomyces]

      See identical proteins and their annotated locations for WP_012999800.1

      UniProtKB/TrEMBL
      C9YT62
      Conserved Domains (3) summary
      cd10316
      Location:300 → 379
      RGL4_M; Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase
      cd10317
      Location:394 → 562
      RGL4_C; C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase
      pfam09284
      Location:45 → 294
      RhgB_N; Rhamnogalacturonan lyase B, N-terminal
    Nucleotide Protein
    Heading Accession and Version

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