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    TPG6 polygalacturonase [ Solanum lycopersicum (tomato) ]

    Gene ID: 101267505, updated on 9-Nov-2023

    Summary

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    Gene symbol
    TPG6
    Gene description
    polygalacturonase
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    See TPG6 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    103 current SL3.0 (GCF_000188115.4) 12 NC_015449.3 (66506462..66508363)
    102 previous assembly SL2.50 (GCF_000188115.3) 12 NC_015449.2 (65525531..65527432)

    Chromosome 12 - NC_015449.3Genomic Context describing neighboring genes Neighboring gene probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 Neighboring gene probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 Neighboring gene probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 Neighboring gene polygalacturonase 5 Neighboring gene 2-alkenal reductase (NADP(+)-dependent)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables polygalacturonase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polygalacturonase
    NP_001307818.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001320889.1 → NP_001307818.1  polygalacturonase

      Status: VALIDATED

      Source sequence(s)
      AEKE03003148
      UniProtKB/TrEMBL
      O22610
      Conserved Domains (2) summary
      pfam00295
      Location:57 → 381
      Glyco_hydro_28; Glycosyl hydrolases family 28
      cl19188
      Location:19 → 395
      PL-6; Polysaccharide Lyase Family 6

    RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SL3.0 Primary Assembly

    Genomic

    1. NC_015449.3 Reference SL3.0 Primary Assembly

      Range
      66506462..66508363
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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