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    LOC117968102 proteasome subunit beta type-2-like [ Acipenser ruthenus (sterlet) ]

    Gene ID: 117968102, updated on 26-Oct-2023

    Summary

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    Gene symbol
    LOC117968102
    Gene description
    proteasome subunit beta type-2-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Acipenser ruthenus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
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    Genomic context

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    See LOC117968102 in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 25 NC_081213.1 (157997..165766)
    101 previous assembly ASM1064508v1 (GCF_010645085.1) 59 NC_048381.1 (404649..413257, complement)

    Chromosome 25 - NC_081213.1Genomic Context describing neighboring genes Neighboring gene claspin Neighboring gene UPF0500 protein C1orf216-like Neighboring gene transcription factor AP-2-epsilon-like Neighboring gene neurochondrin-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteasomal protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of proteasome core complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of proteasome core complex, beta-subunit complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    proteasome subunit beta type-2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fAciRut3.2 maternal haplotype Primary Assembly

    Genomic

    1. NC_081213.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

      Range
      157997..165766
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059000255.1 → XP_058856238.1  proteasome subunit beta type-2-like

    Nucleotide Protein
    Heading Accession and Version

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