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    LOC8280535 agamous-like MADS-box protein AGL80 [ Ricinus communis (castor bean) ]

    Gene ID: 8280535, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC8280535
    Gene description
    agamous-like MADS-box protein AGL80
    Locus tag
    RCOM_1708810
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ricinus communis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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    Genomic context

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    See LOC8280535 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current ASM1957865v1 (GCF_019578655.1) 2 NC_063257.1 (16308769..16309655, complement)
    101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994351.1 (50020..50798)

    Chromosome 2 - NC_063257.1Genomic Context describing neighboring genes Neighboring gene flavin mononucleotide hydrolase 1, chloroplatic Neighboring gene uncharacterized LOC112534973 Neighboring gene DNA-binding protein RHL1 Neighboring gene small nucleolar RNA R71

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    agamous-like MADS-box protein AGL80

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1957865v1

    Genomic

    1. NC_063257.1 Reference ASM1957865v1

      Range
      16308769..16309655 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002520046.3 → XP_002520092.1  agamous-like MADS-box protein AGL80

      See identical proteins and their annotated locations for XP_002520092.1

      UniProtKB/TrEMBL
      B9S273
      Conserved Domains (1) summary
      cd00266
      Location:2 → 85
      MADS_SRF_like; SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in ...
    Nucleotide Protein
    Heading Accession and Version

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