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    LOC130526544 tight junction protein ZO-2-like [ Takifugu flavidus (sansaifugu) ]

    Gene ID: 130526544, updated on 29-Nov-2023

    Summary

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    Gene symbol
    LOC130526544
    Gene description
    tight junction protein ZO-2-like
    Locus tag
    D4764_05G0012050
    See related
    EnsemblRapid:ENSTFLG00005012837
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Takifugu flavidus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
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    Genomic context

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    See LOC130526544 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    RS_2023_06 current ASM371156v2 (GCF_003711565.1) 5 NC_079524.1 (15233027..15272727)

    Chromosome 5 - NC_079524.1Genomic Context describing neighboring genes Neighboring gene 3-hydroxy-3-methylglutaryl-coenzyme A reductase-like Neighboring gene frataxin Neighboring gene uncharacterized LOC130526547 Neighboring gene family with sequence similarity 189 member A2 Neighboring gene amyloid beta (A4) precursor protein-binding, family A, member 1a Neighboring gene uncharacterized LOC130526548

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_079524.1 Chromosome 5 Reference ASM371156v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cell adhesion molecule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-cell junction organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in establishment of endothelial intestinal barrier IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of blood-brain barrier permeability IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein localization to cell-cell junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in bicellular tight junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tight junction protein ZO-2-like
    Names
    Tight junction protein ZO-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_003711565.1-RS_2023_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM371156v2 Primary Assembly

    Genomic

    1. NC_079524.1 Reference ASM371156v2 Primary Assembly

      Range
      15233027..15272727
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_057034302.1 → XP_056890282.1  tight junction protein ZO-2-like isoform X2

    2. XM_057034301.1 → XP_056890281.1  tight junction protein ZO-2-like isoform X1

      Related
      ENSTFLP00005026417.1, ENSTFLT00005027468.1

    3. XM_057034303.1 → XP_056890283.1  tight junction protein ZO-2-like isoform X3

    Nucleotide Protein
    Heading Accession and Version

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