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    plecb plectin b [ Betta splendens (Siamese fighting fish) ]

    Gene ID: 114843202, updated on 20-Aug-2024

    Summary

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    Gene symbol
    plecb
    Gene description
    plectin b
    See related
    EnsemblRapid:ENSBSLG00000017188
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Betta splendens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Anabantiformes; Anabantoidei; Osphronemidae; Betta
    Orthologs
    zebrafish all
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    Genomic context

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    See plecb in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    44
    Annotation release Status Assembly Chr Location
    RS_2023_04 current fBetSpl5.4 (GCF_900634795.4) 16 NC_040896.2 (19388744..19467487, complement)
    101 previous assembly fBetSpl5.3 (GCF_900634795.3) 16 NC_040896.1 (19563652..19640788, complement)

    Chromosome 16 - NC_040896.2Genomic Context describing neighboring genes Neighboring gene riboflavin transporter 2-like Neighboring gene microtubule actin crosslinking factor 1b Neighboring gene R-spondin 2 Neighboring gene eukaryotic translation initiation factor 3, subunit E, a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ankyrin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cadherin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of muscle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in hemidesmosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intermediate filament cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in wound healing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in focal adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in hemidesmosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in intermediate filament IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in perinuclear region of cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in sarcolemma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    plectin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_900634795.4-RS_2023_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fBetSpl5.4 Primary Assembly

    Genomic

    1. NC_040896.2 Reference fBetSpl5.4 Primary Assembly

      Range
      19388744..19467487 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_055503462.1 → XP_055359437.1  plectin isoform X22

      UniProtKB/TrEMBL
      A0A9W2XCI1
      Related
      ENSBSLP00000036657.3, ENSBSLT00000040470.3

    2. XM_055503451.1 → XP_055359426.1  plectin isoform X8

      UniProtKB/TrEMBL
      A0A9W2XBW7
      Related
      ENSBSLP00000035727.3, ENSBSLT00000039475.3

    3. XM_029129523.3 → XP_028985356.1  plectin isoform X9

      UniProtKB/TrEMBL
      A0A6P7KSE2
      Conserved Domains (10) summary
      pfam05483
      Location:1055 → 1469
      SCP-1; Synaptonemal complex protein 1 (SCP-1)
      PTZ00121
      Location:1301 → 2158
      PTZ00121; MAEBL; Provisional
      smart00150
      Location:548 → 642
      SPEC; Spectrin repeats
      smart00250
      Location:4007 → 4038
      PLEC; Plectin repeat
      COG5069
      Location:64 → 286
      SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
      PRK00409
      Location:2523 → 2711
      PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
      cd00176
      Location:644 → 830
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      TIGR02168
      Location:392 → 660
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam00681
      Location:4045 → 4085
      Plectin; Plectin repeat
      cl17036
      Location:835 → 879
      SH3; Src Homology 3 domain superfamily

    4. XM_055503461.1 → XP_055359436.1  plectin isoform X21

      UniProtKB/TrEMBL
      A0A9W2XBX8

    5. XM_055503454.1 → XP_055359429.1  plectin isoform X12

      UniProtKB/TrEMBL
      A0A9W2XCS3

    6. XM_055503458.1 → XP_055359433.1  plectin isoform X17

      UniProtKB/TrEMBL
      A0A9W2XCR3

    7. XM_055503457.1 → XP_055359432.1  plectin isoform X15

      UniProtKB/TrEMBL
      A0A9W2XCM8

    8. XM_055503447.1 → XP_055359422.1  plectin isoform X1

      UniProtKB/TrEMBL
      A0A9W2XCL8

    9. XM_055503448.1 → XP_055359423.1  plectin isoform X2

      UniProtKB/TrEMBL
      A0A9W2XCQ4

    10. XM_029129519.3 → XP_028985352.1  plectin isoform X7

      UniProtKB/TrEMBL
      A0A6P7KRY5
      Related
      ENSBSLP00000036134.2, ENSBSLT00000039910.3
      Conserved Domains (12) summary
      pfam05483
      Location:2100 → 2514
      SCP-1; Synaptonemal complex protein 1 (SCP-1)
      PTZ00121
      Location:2346 → 3203
      PTZ00121; MAEBL; Provisional
      smart00150
      Location:1593 → 1687
      SPEC; Spectrin repeats
      smart00250
      Location:5052 → 5083
      PLEC; Plectin repeat
      COG5069
      Location:1109 → 1331
      SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
      PRK00409
      Location:3568 → 3756
      PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
      cd00176
      Location:1689 → 1875
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      TIGR02168
      Location:1437 → 1705
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam05109
      Location:338 → 613
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      pfam00681
      Location:5090 → 5130
      Plectin; Plectin repeat
      pfam03501
      Location:7 → 99
      S10_plectin; Plectin/S10 domain
      cl17036
      Location:1880 → 1924
      SH3; Src Homology 3 domain superfamily

    11. XM_029129518.3 → XP_028985351.1  plectin isoform X6

      UniProtKB/TrEMBL
      A0A6P7KSD7
      Related
      ENSBSLP00000036118.2, ENSBSLT00000039893.3
      Conserved Domains (12) summary
      pfam05483
      Location:2104 → 2518
      SCP-1; Synaptonemal complex protein 1 (SCP-1)
      PTZ00121
      Location:2350 → 3207
      PTZ00121; MAEBL; Provisional
      smart00150
      Location:1597 → 1691
      SPEC; Spectrin repeats
      smart00250
      Location:5056 → 5087
      PLEC; Plectin repeat
      COG5069
      Location:1109 → 1335
      SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
      PRK00409
      Location:3572 → 3760
      PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
      cd00176
      Location:1693 → 1879
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      TIGR02168
      Location:1441 → 1709
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam05109
      Location:338 → 613
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      pfam00681
      Location:5094 → 5134
      Plectin; Plectin repeat
      pfam03501
      Location:7 → 99
      S10_plectin; Plectin/S10 domain
      cl17036
      Location:1884 → 1928
      SH3; Src Homology 3 domain superfamily

    12. XM_055503450.1 → XP_055359425.1  plectin isoform X5

      UniProtKB/TrEMBL
      A0A9W2XCV4
      Related
      ENSBSLP00000036407.3, ENSBSLT00000040204.3

    13. XM_055503449.1 → XP_055359424.1  plectin isoform X3

      UniProtKB/TrEMBL
      A0A9W2XCE6

    14. XM_029129514.3 → XP_028985347.1  plectin isoform X4

      UniProtKB/TrEMBL
      A0A6P7KRY0
      Related
      ENSBSLP00000037054.3, ENSBSLT00000040899.3
      Conserved Domains (12) summary
      pfam05483
      Location:2116 → 2530
      SCP-1; Synaptonemal complex protein 1 (SCP-1)
      PTZ00121
      Location:2362 → 3219
      PTZ00121; MAEBL; Provisional
      smart00150
      Location:1609 → 1703
      SPEC; Spectrin repeats
      smart00250
      Location:5068 → 5099
      PLEC; Plectin repeat
      COG5069
      Location:1109 → 1347
      SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
      PRK00409
      Location:3584 → 3772
      PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
      cd00176
      Location:1705 → 1891
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      TIGR02168
      Location:1453 → 1721
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam05109
      Location:338 → 613
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      pfam00681
      Location:5106 → 5146
      Plectin; Plectin repeat
      pfam03501
      Location:7 → 99
      S10_plectin; Plectin/S10 domain
      cl17036
      Location:1896 → 1940
      SH3; Src Homology 3 domain superfamily

    15. XM_055503446.1 → XP_055359421.1  plectin isoform X1

      UniProtKB/TrEMBL
      A0A9W2XCL8

    16. XM_055503460.1 → XP_055359435.1  plectin isoform X19

      UniProtKB/TrEMBL
      A0A9W2XCW4

    17. XM_055503459.1 → XP_055359434.1  plectin isoform X18

      UniProtKB/TrEMBL
      A0A9W2XCF6

    18. XM_029129537.3 → XP_028985370.1  plectin isoform X20

      UniProtKB/TrEMBL
      A0A6P7KUV0
      Related
      ENSBSLP00000036507.3, ENSBSLT00000040307.3
      Conserved Domains (10) summary
      pfam05483
      Location:996 → 1410
      SCP-1; Synaptonemal complex protein 1 (SCP-1)
      PTZ00121
      Location:1242 → 2099
      PTZ00121; MAEBL; Provisional
      smart00150
      Location:489 → 583
      SPEC; Spectrin repeats
      smart00250
      Location:3948 → 3979
      PLEC; Plectin repeat
      COG5069
      Location:10 → 227
      SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
      PRK00409
      Location:2464 → 2652
      PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
      cd00176
      Location:585 → 771
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      TIGR02168
      Location:333 → 601
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam00681
      Location:3986 → 4026
      Plectin; Plectin repeat
      cl17036
      Location:776 → 820
      SH3; Src Homology 3 domain superfamily

    19. XM_055503453.1 → XP_055359428.1  plectin isoform X11

      UniProtKB/TrEMBL
      A0A9W2XBY6

    20. XM_055503455.1 → XP_055359430.1  plectin isoform X13

      UniProtKB/TrEMBL
      A0A9W2XCS8

    21. XM_055503452.1 → XP_055359427.1  plectin isoform X10

      UniProtKB/TrEMBL
      A0A9W2XCH0
      Related
      ENSBSLP00000036444.3, ENSBSLT00000040243.3

    22. XM_055503456.1 → XP_055359431.1  plectin isoform X14

      UniProtKB/TrEMBL
      A0A9W2XCJ8

    23. XM_029129530.3 → XP_028985363.1  plectin isoform X16

      UniProtKB/TrEMBL
      A0A6P7KS42
      Conserved Domains (10) summary
      pfam05483
      Location:1030 → 1444
      SCP-1; Synaptonemal complex protein 1 (SCP-1)
      PTZ00121
      Location:1276 → 2133
      PTZ00121; MAEBL; Provisional
      smart00150
      Location:523 → 617
      SPEC; Spectrin repeats
      smart00250
      Location:3982 → 4013
      PLEC; Plectin repeat
      COG5069
      Location:44 → 261
      SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
      PRK00409
      Location:2498 → 2686
      PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
      cd00176
      Location:619 → 805
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      TIGR02168
      Location:367 → 635
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam00681
      Location:4020 → 4060
      Plectin; Plectin repeat
      cl17036
      Location:810 → 854
      SH3; Src Homology 3 domain superfamily
    Nucleotide Protein
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