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    mtm1 myotubularin 1 [ Anoplopoma fimbria (sablefish) ]

    Gene ID: 129093070, updated on 12-Sep-2024

    Summary

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    Gene symbol
    mtm1
    Gene description
    myotubularin 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anoplopoma fimbria
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Anoplopomatales; Anoplopomatidae; Anoplopoma
    Orthologs
    zebrafish all
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    Genomic context

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    See mtm1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2023_03 current Afim_UVic_2022 (GCF_027596085.1) 7 NC_072455.1 (11806251..11834884)

    Chromosome 7 - NC_072455.1Genomic Context describing neighboring genes Neighboring gene acyl-CoA oxidase 3, pristanoyl Neighboring gene N-acetyltransferase 16 Neighboring gene myotubularin related protein 1a Neighboring gene CD99 molecule-like 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_072455.1 Chromosome 7 Reference Afim_UVic_2022

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genomics of sablefish (Anoplopoma fimbria): expressed genes, mitochondrial phylogeny, linkage map and identification of a putative sex gene. Rondeau EB, et al. BMC Genomics, 2013 Jul 6. PMID 23829495, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitochondrion distribution IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in muscle cell cellular homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of autophagosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    myotubularin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_027596085.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Afim_UVic_2022

    Genomic

    1. NC_072455.1 Reference Afim_UVic_2022

      Range
      11806251..11834884
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054600968.1 → XP_054456943.1  myotubularin isoform X2

    2. XM_054600967.1 → XP_054456942.1  myotubularin isoform X1

    Nucleotide Protein
    Heading Accession and Version

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