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    LOC8064246 WD repeat domain-containing protein 83 [ Sorghum bicolor (sorghum) ]

    Gene ID: 8064246, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC8064246
    Gene description
    WD repeat domain-containing protein 83
    Locus tag
    SORBI_3004G171200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sorghum bicolor
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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    Genomic context

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    See LOC8064246 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 4 NC_012873.2 (52371204..52375031)

    Chromosome 4 - NC_012873.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110434464 Neighboring gene uncharacterized LOC8064245 Neighboring gene ethylene-responsive transcription factor ABR1 Neighboring gene probable glutathione S-transferase GSTF1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_012873.2 Chromosome 4 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    WD repeat domain-containing protein 83

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Genomic

    1. NC_012873.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

      Range
      52371204..52375031
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002452195.2 → XP_002452240.1  WD repeat domain-containing protein 83

      See identical proteins and their annotated locations for XP_002452240.1

      UniProtKB/TrEMBL
      A0A921R4H1, C5XU47
      Conserved Domains (3) summary
      COG2319
      Location:12 → 302
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:15 → 302
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:26 → 63
      7WD40; WD40 repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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