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    Peptidyl-tRNA hydrolase II (PTH2) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829426, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Peptidyl-tRNA hydrolase II (PTH2) family protein
    Primary source
    TAIR:AT4G32900
    Locus tag
    AT4G32900
    See related
    Araport:AT4G32900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F26P21.20; F26P21_20
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    8
    Sequence:
    Chromosome: 4; NC_003075.7 (15878569..15881082, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene homeobox-leucine zipper protein ATHB-8 Neighboring gene GATA transcription factor 9 Neighboring gene nuclear pore complex Nup85-like protein Neighboring gene glutamyl-tRNA(Gln) amidotransferase subunit C

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001342186.1
    NM_001342187.1
    NM_119443.4
    NM_202942.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables aminoacyl-tRNA hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    Peptidyl-tRNA hydrolase II (PTH2) family protein
    NP_567907.4
    • Peptidyl-tRNA hydrolase II (PTH2) family protein; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, PTH2 (InterPro:IPR002833); BEST Arabidopsis thaliana protein match is: Peptidyl-tRNA hydrolase II (PTH2) family protein (TAIR:AT3G03010.2); Has 741 Blast hits to 741 proteins in 284 species: Archae - 203; Bacteria - 0; Metazoa - 192; Fungi - 119; Plants - 86; Viruses - 6; Other Eukaryotes - 135 (source: NCBI BLink).
    NP_974671.4
    • Peptidyl-tRNA hydrolase II (PTH2) family protein; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, PTH2 (InterPro:IPR002833); BEST Arabidopsis thaliana protein match is: Peptidyl-tRNA hydrolase II (PTH2) family protein (TAIR:AT5G16870.1); Has 933 Blast hits to 933 proteins in 345 species: Archae - 258; Bacteria - 52; Metazoa - 200; Fungi - 129; Plants - 88; Viruses - 8; Other Eukaryotes - 198 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      15878569..15881082 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202942.5 → NP_974671.4  Peptidyl-tRNA hydrolase II (PTH2) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974671.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UTW6, F4JV77
      Conserved Domains (1) summary
      pfam01981
      Location:79 → 193
      PTH2; Peptidyl-tRNA hydrolase PTH2

    2. NM_001342186.1 → NP_001328355.1  Peptidyl-tRNA hydrolase II (PTH2) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B4F4, O82633
      Conserved Domains (1) summary
      pfam01981
      Location:79 → 165
      PTH2; Peptidyl-tRNA hydrolase PTH2

    3. NM_119443.4 → NP_567907.4  Peptidyl-tRNA hydrolase II (PTH2) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567907.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JV78
      Conserved Domains (1) summary
      cl19212
      Location:80 → 140
      PTH2_family; Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in ...

    4. NM_001342187.1 → NP_001328354.1  Peptidyl-tRNA hydrolase II (PTH2) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B4F4, O82633
      Conserved Domains (1) summary
      pfam01981
      Location:79 → 165
      PTH2; Peptidyl-tRNA hydrolase PTH2
    Nucleotide Protein
    Heading Accession and Version

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