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    HCoSV-D_gp1 polyprotein [ Cosavirus D ]

    Gene ID: 7986824, updated on 29-Jul-2022

    Summary

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    Gene symbol
    HCoSV-D_gp1
    Gene description
    polyprotein
    Locus tag
    HCoSV-D_gp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Cosavirus D (strain: HCoSV-D1, isolate: 5004, nat-host: Homo sapiens)
    Lineage
    Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Picornaviridae; Cosavirus
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    Genomic context

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    Sequence:
    NC_012802.1 (748..7128)

    NC_012802.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_012802.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    polyprotein
    Names
    VP4
    VP2
    VP3
    VP1
    2A
    2B
    3C
    3A
    3B
    3C
    3D

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_012802.1 Reference assembly

      Range
      748..7128
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_002956076.1 polyprotein [Cosavirus D]

      See identical proteins and their annotated locations for YP_002956076.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      B8XTQ4
      Conserved Domains (5) summary
      cd00205
      Location:408 → 566
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
      pfam00548
      Location:1498 → 1638
      Peptidase_C3; 3C cysteine protease (picornain 3C)
      pfam00910
      Location:1129 → 1230
      RNA_helicase; RNA helicase
      cl02808
      Location:1676 → 2123
      RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...
      cl13999
      Location:701 → 848
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

    2. YP_002956119.1 VP4

    3. YP_002956120.1 VP2

      Conserved Domains (1) summary
      cd00205
      Location:60 → 265
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

    4. YP_002956121.1 VP3

      Conserved Domains (1) summary
      cd00205
      Location:70 → 228
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

    5. YP_002956122.1 VP1

      Conserved Domains (1) summary
      cl13999
      Location:132 → 279
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

    6. YP_002956123.1 2A

    7. YP_002956124.1 2B

    8. YP_002956125.1 3C

      Conserved Domains (2) summary
      pfam00910
      Location:116 → 217
      RNA_helicase; RNA helicase
      cl04955
      Location:187 → 263
      LanC_like; Cyclases involved in the biosynthesis of lantibiotics, and similar proteins

    9. YP_002956126.1 3A

    10. YP_002956127.1 3B

    11. YP_002956128.1 3C

      Conserved Domains (1) summary
      pfam00548
      Location:37 → 177
      Peptidase_C3; 3C cysteine protease (picornain 3C)

    12. YP_002956129.1 3D

      Conserved Domains (1) summary
      cl02808
      Location:12 → 441
      RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...
    Protein Accession Links
    GenPept Link UniProtKB Link
    ACL15191.1

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