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    LOC118253407 tyrosine-protein phosphatase non-receptor type 11-like [ Cygnus atratus (black swan) ]

    Gene ID: 118253407, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC118253407
    Gene description
    tyrosine-protein phosphatase non-receptor type 11-like
    See related
    EnsemblRapid:ENSACYG00000010733
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cygnus atratus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Cygnus
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    Genomic context

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    See LOC118253407 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    RS_2023_02 current CAtr_DNAZoo_HiC_assembly (GCF_013377495.2) 21 NC_066382.1 (3370072..3422653, complement)
    100 previous assembly Cygnus_atratus_primary_v1.0 (GCF_013377495.1) Unplaced Scaffold NW_023336636.1 (3401810..3443722, complement)

    Chromosome 21 - NC_066382.1Genomic Context describing neighboring genes Neighboring gene tubulin tyrosine ligase like 10 Neighboring gene chromosome 21 C1orf159 homolog Neighboring gene ring finger protein 223 Neighboring gene agrin Neighboring gene hes family bHLH transcription factor 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein tyrosine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tyrosine-protein phosphatase non-receptor type 11-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_013377495.2-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAtr_DNAZoo_HiC_assembly Primary Assembly

    Genomic

    1. NC_066382.1 Reference CAtr_DNAZoo_HiC_assembly Primary Assembly

      Range
      3370072..3422653 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_050714948.1 → XP_050570905.1  tyrosine-protein phosphatase non-receptor type 11-like isoform X10

    2. XM_035557731.2 → XP_035413624.1  tyrosine-protein phosphatase non-receptor type 11-like isoform X10

      Related
      ENSACYP00000017603.1
      Conserved Domains (3) summary
      cd09931
      Location:111 → 219
      SH2_C-SH2_SHP_like; C-terminal Src homology 2 (C-SH2) domain found in SH2 domain Phosphatases (SHP) proteins
      cd10340
      Location:5 → 103
      SH2_N-SH2_SHP_like; N-terminal Src homology 2 (N-SH2) domain found in SH2 domain Phosphatases (SHP) proteins
      cd14544
      Location:274 → 523
      PTPc-N11_6; catalytic domain of tyrosine-protein phosphatase non-receptor type 11 and type 6

    3. XM_050714940.1 → XP_050570897.1  tyrosine-protein phosphatase non-receptor type 11-like isoform X7

    4. XM_035557733.2 → XP_035413626.1  tyrosine-protein phosphatase non-receptor type 11-like isoform X10

      Related
      ENSACYP00000017542.1
      Conserved Domains (3) summary
      cd09931
      Location:111 → 219
      SH2_C-SH2_SHP_like; C-terminal Src homology 2 (C-SH2) domain found in SH2 domain Phosphatases (SHP) proteins
      cd10340
      Location:5 → 103
      SH2_N-SH2_SHP_like; N-terminal Src homology 2 (N-SH2) domain found in SH2 domain Phosphatases (SHP) proteins
      cd14544
      Location:274 → 523
      PTPc-N11_6; catalytic domain of tyrosine-protein phosphatase non-receptor type 11 and type 6

    5. XM_050714947.1 → XP_050570904.1  tyrosine-protein phosphatase non-receptor type 11-like isoform X10

    6. XM_050714939.1 → XP_050570896.1  tyrosine-protein phosphatase non-receptor type 11-like isoform X7

    7. XM_050714938.1 → XP_050570895.1  tyrosine-protein phosphatase non-receptor type 11-like isoform X7

    8. XM_050714951.1 → XP_050570908.1  tyrosine-protein phosphatase non-receptor type 11-like isoform X11

    9. XM_050714949.1 → XP_050570906.1  tyrosine-protein phosphatase non-receptor type 11-like isoform X11

    10. XM_050714950.1 → XP_050570907.1  tyrosine-protein phosphatase non-receptor type 11-like isoform X11

    11. XM_050714941.1 → XP_050570898.1  tyrosine-protein phosphatase non-receptor type 11-like isoform X8

    12. XM_050714942.1 → XP_050570899.1  tyrosine-protein phosphatase non-receptor type 11-like isoform X8

    13. XM_050714943.1 → XP_050570900.1  tyrosine-protein phosphatase non-receptor type 11-like isoform X8

    14. XM_050714944.1 → XP_050570901.1  tyrosine-protein phosphatase non-receptor type 11-like isoform X8

    15. XM_050714952.1 → XP_050570909.1  tyrosine-protein phosphatase non-receptor type 11-like isoform X11

    16. XM_050714937.1 → XP_050570894.1  tyrosine-protein phosphatase non-receptor type 11-like isoform X6

    17. XM_050714945.1 → XP_050570902.1  tyrosine-protein phosphatase non-receptor type 11-like isoform X9

    18. XM_050714946.1 → XP_050570903.1  tyrosine-protein phosphatase non-receptor type 11-like isoform X9

    19. XM_050714936.1 → XP_050570893.1  tyrosine-protein phosphatase non-receptor type 11-like isoform X5

    20. XM_050714935.1 → XP_050570892.1  tyrosine-protein phosphatase non-receptor type 11-like isoform X4

    21. XM_035557729.2 → XP_035413622.1  tyrosine-protein phosphatase non-receptor type 11-like isoform X4

      Conserved Domains (3) summary
      cd09931
      Location:138 → 246
      SH2_C-SH2_SHP_like; C-terminal Src homology 2 (C-SH2) domain found in SH2 domain Phosphatases (SHP) proteins
      cd10340
      Location:32 → 130
      SH2_N-SH2_SHP_like; N-terminal Src homology 2 (N-SH2) domain found in SH2 domain Phosphatases (SHP) proteins
      cd14544
      Location:301 → 550
      PTPc-N11_6; catalytic domain of tyrosine-protein phosphatase non-receptor type 11 and type 6

    22. XM_050714933.1 → XP_050570890.1  tyrosine-protein phosphatase non-receptor type 11-like isoform X3

    23. XM_050714932.1 → XP_050570889.1  tyrosine-protein phosphatase non-receptor type 11-like isoform X2

    24. XM_050714931.1 → XP_050570888.1  tyrosine-protein phosphatase non-receptor type 11-like isoform X1

    RNA

    1. XR_007709091.1 RNA Sequence

    2. XR_007709089.1 RNA Sequence

    3. XR_007709086.1 RNA Sequence

    4. XR_007709093.1 RNA Sequence

    5. XR_007709081.1 RNA Sequence

    6. XR_007709084.1 RNA Sequence

    7. XR_007709090.1 RNA Sequence

    8. XR_007709088.1 RNA Sequence

    9. XR_007709087.1 RNA Sequence

    10. XR_007709094.1 RNA Sequence

    11. XR_007709092.1 RNA Sequence

    12. XR_007709085.1 RNA Sequence

    13. XR_007709083.1 RNA Sequence

    14. XR_007709082.1 RNA Sequence

    Nucleotide Protein
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