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    LOC100280990 RING-H2 finger protein ATL1R [ Zea mays ]

    Gene ID: 100280990, updated on 23-Dec-2022

    Summary

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    Gene symbol
    LOC100280990
    Gene description
    RING-H2 finger protein ATL1R
    Locus tag
    ZEAMMB73_Zm00001d051501
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    GRMZM2G081285
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 4 NC_050099.1 (162269536..162270399)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 4 NC_024462.2 (160475495..160476358)

    Chromosome 4 - NC_050099.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103653930 Neighboring gene Nucleotide-diphospho-sugar transferase family protein Neighboring gene calcium-dependent protein kinase 5 Neighboring gene pectinesterase inhibitor 12

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
    2. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    3. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    RING-H2 finger protein ATL1R
    Names
    RING-H2 finger protein ATL80
    putative RING zinc finger domain superfamily protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001153910.1 → NP_001147382.1  RING-H2 finger protein ATL1R

      See identical proteins and their annotated locations for NP_001147382.1

      Status: PROVISIONAL

      Source sequence(s)
      EU955098
      UniProtKB/TrEMBL
      A0A3L6F0R1, A0A8J8Y7L0, B4FPP9
      Conserved Domains (1) summary
      cd16454
      Location:100 → 143
      RING-H2_PA-TM-RING; RING finger, H2 subclass, found in the PA-TM-RING ubiquitin ligase family

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050099.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      162269536..162270399
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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