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    LOC100274580 uncharacterized LOC100274580 [ Zea mays ]

    Gene ID: 100274580, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC100274580
    Gene description
    uncharacterized LOC100274580
    Locus tag
    ZEAMMB73_Zm00001d039513
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    AUX18; GRMZM2G104176
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    Genomic context

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    See LOC100274580 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 3 NC_050098.1 (7049188..7051719, complement)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 3 NC_024461.2 (6287613..6290166, complement)

    Chromosome 3 - NC_050098.1Genomic Context describing neighboring genes Neighboring gene hexokinase1 Neighboring gene uncharacterized LOC103649640 Neighboring gene uncharacterized LOC100500956 Neighboring gene uncharacterized LOC100272718

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
    2. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    3. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Auxin-responsive protein IAA2; uncharacterized protein LOC100274580
    Names
    AUX/IAA transcription factor
    Auxin-responsive protein IAA26
    IAA2-auxin-responsive Aux/IAA family member

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001148933.1 → NP_001142405.1  Auxin-responsive protein IAA2

      See identical proteins and their annotated locations for NP_001142405.1

      Status: PROVISIONAL

      Source sequence(s)
      BT043409
      UniProtKB/TrEMBL
      B4G221, C0PLI6
      Conserved Domains (1) summary
      pfam02309
      Location:18 → 207
      AUX_IAA; AUX/IAA family

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050098.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      7049188..7051719 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008674320.4 → XP_008672542.1  uncharacterized protein LOC100274580 isoform X1

      See identical proteins and their annotated locations for XP_008672542.1

      UniProtKB/TrEMBL
      B4G221, C0PLI6
      Conserved Domains (1) summary
      pfam02309
      Location:18 → 207
      AUX_IAA; AUX/IAA family
    Nucleotide Protein
    Heading Accession and Version

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