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    LOC100246013 heterogeneous nuclear ribonucleoprotein 1 [ Vitis vinifera (wine grape) ]

    Gene ID: 100246013, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100246013
    Gene description
    heterogeneous nuclear ribonucleoprotein 1
    Locus tag
    VIT_00012784001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
    Also known as
    GO:0003676 GO:0000166
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    Genomic context

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    See LOC100246013 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 18 NC_081822.1 (28547685..28552474, complement)
    102 previous assembly 12X (GCF_000003745.3) 18 NC_012024.3 (23328396..23333183)

    Chromosome 18 - NC_081822.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At5g57250, mitochondrial Neighboring gene pentatricopeptide repeat-containing protein At3g61360 Neighboring gene uncharacterized LOC100855073 Neighboring gene subtilisin-like protease SBT3.6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heterogeneous nuclear ribonucleoprotein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081822.1 Reference ASM3070453v1 Primary Assembly

      Range
      28547685..28552474 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002277190.5 → XP_002277226.1  heterogeneous nuclear ribonucleoprotein 1

      UniProtKB/TrEMBL
      A0A438E132, F6GYT6
      Conserved Domains (1) summary
      cl17169
      Location:21 → 91
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version

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