U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC100260880 protein ECERIFERUM 2 [ Vitis vinifera (wine grape) ]

    Gene ID: 100260880, updated on 23-Oct-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC100260880
    Gene description
    protein ECERIFERUM 2
    Locus tag
    VIT_00009186001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC100260880 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 18 NC_081822.1 (5887330..5889102, complement)
    102 previous assembly 12X (GCF_000003745.3) 18 NC_012024.3 (5900434..5902199, complement)

    Chromosome 18 - NC_081822.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein YMR317W Neighboring gene NADPH--cytochrome P450 reductase Neighboring gene VIN3-like protein 2 Neighboring gene protein SICKLE

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acyltransferase activity, transferring groups other than amino-acyl groups IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    protein ECERIFERUM 2
    Names
    hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase-like
    protein ECERIFERUM 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081822.1 Reference ASM3070453v1 Primary Assembly

      Range
      5887330..5889102 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002283745.5 → XP_002283781.1  protein ECERIFERUM 2

      UniProtKB/TrEMBL
      A0A438F8L9, A0A438G048
      Conserved Domains (2) summary
      pfam02458
      Location:18 → 416
      Transferase; Transferase family
      cl23789
      Location:18 → 275
      PLN02481; Omega-hydroxypalmitate O-feruloyl transferase
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials