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    LOC100251846 DExH-box ATP-dependent RNA helicase DExH14 [ Vitis vinifera (wine grape) ]

    Gene ID: 100251846, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100251846
    Gene description
    DExH-box ATP-dependent RNA helicase DExH14
    Locus tag
    VIT_00007875001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
    Also known as
    GO:0008026 GO:0004386 GO:0017111; GO:0008026 GO:0004386 GO:0017111 GO:0016787 GO:0005524 GO:0000166
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    Genomic context

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    See LOC100251846 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    49
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 17 NC_081821.1 (8444168..8501078, complement)
    102 previous assembly 12X (GCF_000003745.3) 17 NC_012023.3 (8047114..8103947, complement)

    Chromosome 17 - NC_081821.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104882295 Neighboring gene flavonoid 3'-monooxygenase-like Neighboring gene APO protein 3, mitochondrial Neighboring gene PLASMODESMATA CALLOSE-BINDING PROTEIN 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DExH-box ATP-dependent RNA helicase DExH14
    Names
    activating signal cointegrator 1 complex subunit 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081821.1 Reference ASM3070453v1 Primary Assembly

      Range
      8444168..8501078 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002284093.4 → XP_002284129.1  DExH-box ATP-dependent RNA helicase DExH14 isoform X1

      See identical proteins and their annotated locations for XP_002284129.1

      Conserved Domains (5) summary
      smart00490
      Location:1574 → 1655
      HELICc; helicase superfamily c-terminal domain
      smart00487
      Location:1284 → 1481
      DEXDc; DEAD-like helicases superfamily
      COG1204
      Location:411 → 1206
      BRR2; Replicative superfamily II helicase [Replication, recombination and repair]
      pfam00270
      Location:442 → 619
      DEAD; DEAD/DEAH box helicase
      pfam02889
      Location:941 → 1248
      Sec63; Sec63 Brl domain

    2. XM_010664950.3 → XP_010663252.1  DExH-box ATP-dependent RNA helicase DExH14 isoform X2

      Conserved Domains (5) summary
      smart00490
      Location:1296 → 1377
      HELICc; helicase superfamily c-terminal domain
      smart00487
      Location:1006 → 1203
      DEXDc; DEAD-like helicases superfamily
      COG1204
      Location:133 → 928
      BRR2; Replicative superfamily II helicase [Replication, recombination and repair]
      pfam00270
      Location:164 → 341
      DEAD; DEAD/DEAH box helicase
      pfam02889
      Location:663 → 970
      Sec63; Sec63 Brl domain
    Nucleotide Protein
    Heading Accession and Version

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