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    LOC100266260 UBP1-associated protein 2B [ Vitis vinifera (wine grape) ]

    Gene ID: 100266260, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100266260
    Gene description
    UBP1-associated protein 2B
    Locus tag
    VIT_00022197001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
    Also known as
    GO:0003676
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    Genomic context

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    See LOC100266260 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 7 NC_081811.1 (28029388..28035599)
    102 previous assembly 12X (GCF_000003745.3) 7 NC_012013.3 (17383408..17389627)

    Chromosome 7 - NC_081811.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100266317 Neighboring gene transfer RNA valine (anticodon CAC) Neighboring gene uncharacterized LOC100243985 Neighboring gene transcription factor TGA1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    UBP1-associated protein 2B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081811.1 Reference ASM3070453v1 Primary Assembly

      Range
      28029388..28035599
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_019221070.2 → XP_019076615.1  UBP1-associated protein 2B isoform X2

      UniProtKB/TrEMBL
      A0A438F5A5, A0A438KJC6

    2. XM_002276549.4 → XP_002276585.1  UBP1-associated protein 2B isoform X1

      UniProtKB/TrEMBL
      A0A438F5A5, A0A438KJC6
      Conserved Domains (2) summary
      pfam01001
      Location:271 → 349
      HCV_NS4b; Hepatitis C virus non-structural protein NS4b
      cd12384
      Location:183 → 258
      RRM_RBM24_RBM38_like; RNA recognition motif in eukaryotic RNA-binding protein RBM24, RBM38 and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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